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Most of the creation is done with Cinema4D. Cinema4D allows to add extra functions using Python. With the open-source plug-in, embedded Python Molecular Viewer (ePMV) animators can tap into scientific databases, such as the Protein Data Bank (http://www.pdb.org), to extract molecular structures, images, microscopy data and other key information.
Maxon Cinema4D R13
Joel O tron’s MicroFloaties Rig
Adobe After Effects
Python Molecular Viewer – credits: Johnson, G.T. and Autin, L., Goodsell, D.S., Sanner, M.F., Olson, A.J. (2011). ePMV Embeds Molecular Modeling into Professional Animation Software Environments. Structure 19, 293-303.
The animation is just a proof of concept, i’m an animator not a scientist, the visual representation is not verified. For accurate information on the IgG1 molecule structure i would recommend to search elsewhere.